rs47332888 SNP Detail

Summary

• ID
  rs47332888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:88189112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TAGGACTTAG GACAGTACCC AGTCTCACCC AGACAAGGGA
  CTACACAATG GCCGAGAGAA TAGGTGGATT TACCATGAAA GAGTTAGGGA ATCCCCCTGA
  R
  ACAGGTTTCT TCACTAGGCC CAAAGGAACA GCATAATCAG GCATTTACTA AGAACCCCTG
  GTGGTGGGCT TAGCAATAGA CTAGCATTAC ACCTGGCTCC C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135470184	ENSMUSSNP2515755	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47332888					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88189112 () rs orientation: forward

Symbol	Name	Function Class
Gm38392	predicted gene, 38392	Intron
Rr375311	regulatory region 375311	within coordinates
Rr579701	regulatory region 579701	355 bp distal
Tsacc	TSSK6 activating co-chaperone	952 bp downstream
Tssr931	transcription start site region 931	232 bp upstream
Tssr33995	transcription start site region 33995	519 bp upstream