rs47332988 SNP Detail

Summary

• ID
  rs47332988
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:55476264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA TCCCAGCAGT GGCTGTCCTG
  K
  AACTCACTCT GTAGACTAGG CTGGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146361501	ENSMUSSNP1907443	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321127985	CHEV_4_55489136	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47332988					SNP	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55476264 () rs orientation: forward

Symbol	Name	Function Class
Gm12510	predicted gene 12510	within coordinates
Rr376520	regulatory region 376520	within coordinates
Tssr37333	transcription start site region 37333	1320 bp upstream
Tssr37334	transcription start site region 37334	1462 bp upstream
Tssr37335	transcription start site region 37335	1608 bp upstream
Tssr37336	transcription start site region 37336	1659 bp upstream
Tssr37337	transcription start site region 37337	1922 bp upstream
Tssr41779	transcription start site region 41779	863 bp upstream
Tssr41780	transcription start site region 41780	1118 bp downstream