rs47333991 SNP Detail

Summary

• ID
  rs47333991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88482822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCAAAAC CCAGTGAGGG
  AACAAGATAT TCAGGTACCA ACCCACAGTA GGGTACGGGG AACCACACAC CACGACTGAG
  TCATGAGGAG AGACAGCAAC TGCATACCCT TACATGCAGA AATAAAAGGA ACAACCAGGG
  CACCCAGACA GTTTGGATGG GCCATCTAGC AGGTAGACAC AGGAATGGCA ATGCCAAGAA
  Y
  GGACAAGAGG CTCATGCCAG AAGCCCCACC ACTCCCCCAA GAGGATTTTC TGCAGTTCTG
  TCCCAGAGAG CTGAGTTCCC TCAAAGTCCC ACACCAGTCA CCACACATGG GGGACAAAGA
  AGCAGGTGAA CAGATATTTC CGATTTCACA ACTCAGACAC TCAAACACTT GCCTGATGGC
  TTCCAGCAGA CATCAGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63579277	NES17028539	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47333991					SNP	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63579277	NES17028539	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88482822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7510	CpG island 7510	1968 bp proximal
Gm62180	predicted gene, 62180	within coordinates
Tssr132609	transcription start site region 132609	1661 bp upstream
Tssr135809	transcription start site region 135809	1587 bp downstream
Zdhhc25	zinc finger, DHHC domain containing 25	1683 bp upstream