rs47334696 SNP Detail

Summary

• ID
  rs47334696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8687744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATATAA AAAAACTTTT
  TAAAAAGTAT TCAGAAGTAC AAACTCTGGA CCGCGGACGC AGCCATCCAG AAAAATATAA
  ATTTGAAGTT AAAATTTAAA ATATTATTAT TATTACTATT ATTATCATTA TTATTTTAAA
  TGTGAAAAAT TGTTATAAAA GCATATGTTG TACTATATAT TATTATCATG TTATATATTA
  Y
  GTTCCTTAGT GTTATCGCAT CCTTATATAC TGTGTCTCGC TTGGTGTCTG CTGACCCCTA
  ACACCCTGTT TTCCATTTTA TATTCCTGCA CAAACATGAC CAAGAAGCAC TTGGAGAAGA
  AAGGTTTTAT TCAGCTTAGT CTTTCACATT GCTGTTCATC ACCAAAGGAA GTCAGGACTG
  GAACTCAAGC AGGTCAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61347599	NES16951197	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47334696					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61347599	NES16951197	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8687744 () rs orientation: forward

Symbol	Name	Function Class
Gm56531	predicted gene, 56531	within coordinates
Rr403226	regulatory region 403226	1038 bp upstream
Tssr112727	transcription start site region 112727	441 bp downstream
Tssr115717	transcription start site region 115717	705 bp upstream