rs47337712 SNP Detail

Summary

• ID
  rs47337712
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156267282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCCTCA ATTTTAACAA
  CATCAAAATT ATAACAAGAT TATGTAATTC TACCAAGAAT TATTAATTAG CACTGCCCTG
  TTAGAATGAG CAGTTTTCTC TGTAGCCCTG TATGGACAGC CCGCCTCCAG CGCTGCCCCT
  CACTGGGCAC CTCTGTGCCC CACACACTTC CTCCCCCTTT CATGGTTACC TTGGGTAGTT
  A
  TCTCGGTAAA TAAGTGTAGG CGCAAACAGG AAGTACAGGT ACTGGTTGAC TGTGGGTAGT
  GGATCTTTGC CTAAAAAAGG AAAGCTATTG GATTACAAGA TCTTTGACTT GACCCAGAAA
  ACCAGGAGAA CCAAAGTCAG CAACAAGAAC AGGGAAGTGG GGAGGGTGGT GGCACACGCC
  TTTAATCTCA GGCAGATTAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss145796620	ENSMUSSNP2790764	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs47337712					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156267282 () rs orientation: forward

Symbol	Name	Function Class
Rr31351	regulatory region 31351	1622 bp distal
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	within coordinates
Tssr14442	transcription start site region 14442	393 bp upstream
Tssr14443	transcription start site region 14443	1670 bp downstream
Tssr14444	transcription start site region 14444	1688 bp downstream