rs47339606 SNP Detail

Summary

• ID
  rs47339606
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153537359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAACACT AATCTGTCGC
  CCTCCAGGCC TAGAGGGTGG GGACAGATCA TGCCCAAGAT GACTCCTGCC CTGTGCCATA
  TTGCACAAGC AGGGCATAGC ACTCCTGAGA CCTCTCCTGA GACGACCTCA GACCCTGAGC
  CACCCGGGCA CCACTAAGAG GAGCAAGCGA GTCGTGGAGA AATGAAAGAG AAGGAGAAGC
  R
  GAAGGAAGTG GGCACAGTGG AGAGAGAGGT AGTGAGGAAC AGCCTGCTGT GAGTACCCAG
  TGCTGCTACC TTGGACCATG GTGGCCTGTG CTGCCACCAG GTGGTCACAT CTGGGTCTGT
  GGCCCTTCAG CAGCAGGGGT CTGTTACTGC CAAAGGGCTG TACAGAACTG GTCCTACCCT
  TCACCTGGGC ATTGAGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136113999	ENSMUSSNP2324343	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47339606					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153537359 () rs orientation: forward

Symbol	Name	Function Class
Gm25757	predicted gene, 25757	430 bp downstream
Rr587767	regulatory region 587767	1112 bp distal
Rr587768	regulatory region 587768	969 bp distal
Rr587769	regulatory region 587769	778 bp distal
Rr587770	regulatory region 587770	within coordinates
Rr587771	regulatory region 587771	497 bp distal
Rr587772	regulatory region 587772	88 bp proximal