rs47340411 SNP Detail

Summary

• ID
  rs47340411
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174313874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGATGTAAG TCAACAATAA
  CTATGACAAG ATGACATTGT AGAATAGAGC ACAATAAATC AGTCAGAAAG GAGGGCTGGA
  ACAAGGCGTA AACCAGTTAT TTAGGTAGAA AGCTCTGTTG TTCTTGTGTG TGGCACCATG
  AACCTGGGTG GTATAATTCC CAACACCCCA CTGACTCTGA TCCTGTTTCC CACTATAAGT
  T
  CAGAGAACCA TAAAGCTGTG ACTGGATGTG ATAGCAGACA CTGGCTATCA GTCAGCTGTC
  ATGGCTGAGA GGAATAGGAA ACAGAGGTGA CAAATTATCT GCAAGAGCAG GCCCTGGTCT
  CTAGATCAAG AGATCTTGAT CAAGAAATCA AGAGATCTGC TCTCCAGATT GACTGTCATC
  AATGTTTGGC ATCATGGTAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148343899	ENSMUSSNP3771571	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47340411					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174313874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	237 bp proximal
Gm38546	predicted gene, 38546	1008 bp upstream
Prelid3b	PRELI domain containing 3B	within coordinates
Rr397557	regulatory region 397557	796 bp upstream
Rr572131	regulatory region 572131	1154 bp distal
Rr572132	regulatory region 572132	765 bp distal
Rr572133	regulatory region 572133	within coordinates
Rr572134	regulatory region 572134	521 bp proximal
Rr572135	regulatory region 572135	807 bp proximal
Rr572136	regulatory region 572136	916 bp proximal
Rr572137	regulatory region 572137	990 bp proximal
Rr572138	regulatory region 572138	1115 bp proximal
Tssr28035	transcription start site region 28035	797 bp downstream
Tssr28036	transcription start site region 28036	868 bp downstream