rs47341114 SNP Detail

Summary

• ID
  rs47341114
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129914210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGAGCAA ACAGCTTTCC
  TTTTATTGGT CTATCAGTTT CAGAAATATC AGACAGGTGT TGCCATGTAA AAAAAAATTG
  AGGACAGTCA AGGACTAACC TAGTGAACAT CTGAATTAAG ATTTAGAGCT GGAAGGAGGA
  CAGGCGGCTG GTCAAAGACT CACTGGAGAA GGATGCTTGA CACCTTGAGG TTGGTTGACT
  M
  CTGGAACCCA GAAGGTGGAA AGAAACAACC AACCCCAATA AGGTGCCCTT GGACCTTCAC
  ACAGGTACCG AGGTTCTCCA GCACACACAG AGGCATAAAT ACACTGGCCA TCCCGGCTAT
  TCAGTTAGTG AACAAGGCCA TTTAGAAGAA GGATTTAGAA CCAGTGTTGA CAATGGAGAA
  AGACAGTCAC AAGTCAACAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144477275	ENSMUSSNP4899382	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
ss321692393	CHEV_5_130361240	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47341114					SNP	C	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129914210 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	1598 bp proximal
Rr399383	regulatory region 399383	1839 bp upstream
Tssr53498	transcription start site region 53498	1770 bp downstream
Tssr53499	transcription start site region 53499	1919 bp downstream