rs47341524 SNP Detail

Summary

• ID
  rs47341524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54867451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTTCAAA TGATTATCTT
  GTGTCAAGTT GACGTAAACT AGCCATCACA CATTGAGTAA TAATTCTGGC ATCACAAGTA
  CATGGTTGTG GGTAGACAAG CCCCGAATCT TACTAGAATT GACTATACAT CCTTAAATGA
  TCCTGTTTCA GTCTTGTTAC ACTCAATAGT AACATGAGTA GAGAAGTGAA TCCATATATT
  R
  CCTTGCCATA TCTCCAGCTT ATGCCCAGAG GCTAGCCAGT TACCCCTGTA GGGATCAGGA
  CTGGTCTGGA TGGTTATACC AAGATCTCTC ACTTGGACAT CAGTGGCCCT GGACTGATTT
  TCTTTCTCCA TAGGCACCTG CCTCTGTAAA GTCCAGTTCT TCACACTAGC CTAGGGCAGC
  ACCCTATACT CCGGCTTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61403644	NES16782416	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		A	A	A	A		A
ss322966289	CHEV_9_54807974	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47341524					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61403644	NES16782416	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54867451 () rs orientation: forward

Symbol	Name	Function Class
Rr204186	regulatory region 204186	344 bp proximal
Rr209620	regulatory region 209620	750 bp proximal