rs47342052 SNP Detail

Summary

• ID
  rs47342052
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:119008610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTATTTGG ATCTCTGTAG
  ACTCCAAGCT TGTCTGCTAT CTCTGAGCAG CAATGTGGGG GACGGATTTC TGTACACATG
  GCTCTCACAC TGTCCTCTTT ATGGAATGCC ATCTACTACA GGACATGTTT ATGAAATTCT
  CAGGGCAGGT GGCGCTATTT AGGCGATCAG ATGAGAACGG ATGAGGCAGT GGTTTCCTCA
  M
  TATCGTCTGT GGGCTCTCCG GATGGCATTG CTATCTGTAA TGTGTGTAGT TGGCTAAAAC
  AACCAAGCAC CAGACATGAA AGCATTGTCA CGAAGGCCCT TGGGGGGTGG GGGTGGGGGA
  GAATCACATG CAGTGACCTT ATGGCCAAGG CGCAGACAAG GGAGGAATTT TAGAAAGCAT
  GTCAGTTTGA GTGGGTGAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60667037	NES16246372	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47342052					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60667037	NES16246372	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:119008610 () rs orientation: forward

Symbol	Name	Function Class
Cdh13	cadherin 13	1862 bp upstream
Cpgi21109	CpG island 21109	1690 bp proximal
Rr670996	regulatory region 670996	1522 bp proximal
Rr670997	regulatory region 670997	1873 bp proximal
Tssr79649	transcription start site region 79649	1717 bp upstream
Tssr79650	transcription start site region 79650	1736 bp upstream
Tssr79651	transcription start site region 79651	1752 bp upstream
Tssr79652	transcription start site region 79652	1782 bp upstream
Tssr79653	transcription start site region 79653	1848 bp upstream
Tssr79654	transcription start site region 79654	1873 bp upstream
Tssr79655	transcription start site region 79655	1918 bp upstream