rs47343260 SNP Detail

Summary

• ID
  rs47343260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100167558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAC CACTACCAAA ACTATTCTGC
  R
  TGATGGCGGG GCAAGGGGGG CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148473223	ENSMUSSNP1508037	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss325082837	CHEV_15_100100108	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47343260					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100167558 () rs orientation: forward

Symbol	Name	Function Class
Gm56733	predicted gene, 56733	365 bp upstream
Rr391198	regulatory region 391198	within coordinates
Tssr4717	transcription start site region 4717	411 bp upstream
Tssr133109	transcription start site region 133109	487 bp downstream