rs47344129 SNP Detail

Summary

• ID
  rs47344129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29267862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTAGGGGC ATACATGATG CATGCCATAC ATAAAACACC
  CAGACGAATA AGACCAACAG GGAAAGGAAG CAGGATGGCT CTGGGCTCAA CAGTGATACA
  Y
  AGTAGGTGCC TCACCACAGT GTGGGGCTCA GAAGAGCTTT CTGGGAGGAC GGGGATCATT
  AGACACACCC ACTCCTGTCA GTGCCAGGAT TCGTGCCCCG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60559276	NES16575639	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47344129					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559276	NES16575639	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29267862 () rs orientation: forward

Symbol	Name	Function Class
Rr524771	regulatory region 524771	1726 bp distal
Rr524772	regulatory region 524772	1789 bp distal
Rr524773	regulatory region 524773	450 bp distal
Rr524774	regulatory region 524774	691 bp distal
Rr524775	regulatory region 524775	268 bp distal
Rr524776	regulatory region 524776	450 bp proximal
Rr524777	regulatory region 524777	629 bp proximal
Tssr143492	transcription start site region 143492	1670 bp downstream