rs47344462 SNP Detail

Summary

• ID
  rs47344462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94522561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGGGAAT CTGCATTTGT
  TACCATACGT AACTCCTTGA TTTTCTTGTG CAGCATCTTA ACAAGTGGAG CTGAGCTCTG
  AGCACCCCTA CCCTGCAGTC CCTAAATGGG GAGTATTATT TTCAGAGCTC TGAGGCGATG
  CGTCTGAATT CCTTTGGTCT GAGTGGCATG GCCATGTGTG TCTTTATAAG GCCAGGGCCC
  Y
  GCCAAAAGAT AACCACAGGT GGATCCAAAC GGCTCGTGCT GCTTCTAAAG ATAGCAATGT
  CAAATCCTGC CGATGACTCT GTAGGCTCAA ATGTGTTCTC AGCTGCACAG CCTTATATAG
  AGAGGCGAGG CCCCAGGACG GATCTGTGGA CACACGCTAT AAAGCACCCC CCCCCCTGCT
  TTCAGAACTC TGACACGTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60514140	NES16533882	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47344462					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60514140	NES16533882	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94522561 () rs orientation: forward

Symbol	Name	Function Class
Gm41505	predicted gene, 41505	15 bp upstream
Gm41507	predicted gene, 41507	1625 bp downstream
Rr1836	regulatory region 1836	1452 bp proximal
Rr520192	regulatory region 520192	within coordinates
Rr520193	regulatory region 520193	371 bp proximal
Tssr139566	transcription start site region 139566	178 bp upstream
Tssr139567	transcription start site region 139567	253 bp upstream
Tssr139568	transcription start site region 139568	278 bp upstream