rs47344472 SNP Detail

Summary

• ID
  rs47344472
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185868674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTACAAAGG CCATGATGCT ACAGGGATTC TACACCGTGG
  CAGTGGCTGC ATCTGTACTC ACATCATGTT CTCCTCTGTA TCTCGGGTTA CCCCCGTGTC
  T
  CTATGCCCAA TCCTTCGCTT TCCTTTTAAA AGGACTCCAT TCATCTGATG TAGTGCCTCC
  TCTAAATCCT AGATCATTTC CACTTGAGAT TCCCAATCT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146452388	ENSMUSSNP3230353	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320182227	CHEV_1_187960356	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47344472					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185868674 () rs orientation: forward

Symbol	Name	Function Class
Rr425453	regulatory region 425453	276 bp proximal
Rr425454	regulatory region 425454	1367 bp proximal
Tssr10623	transcription start site region 10623	1462 bp upstream