rs47345347 SNP Detail

Summary

• ID
  rs47345347
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40519998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCGGTGC CAGAGACACC
  TGCCTGCCAG AAATCCACAA TCTCACTAAA TTCTTCTAGG CCAACTTTTT TCACCTTAGG
  AAAATTATTC CTGTGTGTTC GATAGGCCTG CAATATATCT TCAATCCTTT AATCTAAAAA
  AAGTTAAAGG CCTTATTAAT TTGAAGAAGA TGATGATGAT GATAATAATA ACAATAATAT
  K
  TTATGAGTTC TGTGATGTAT TTCTGATTTT CCGTGTTGTT GAGGATCTGG CTACTCGTTT
  AAAACTAATT ATCATGTAAT TTTAGTATAT TGCTTTAGTA TTACCCTTAC CTCATAGGTA
  CCCTACATGC AAGTCAGAAT TTCTTTTTGG TGTAGTTTAA AAATAAATCT TATCATACAA
  CTTGTCCTTG AGATTGGGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147693590	ENSMUSSNP5994955	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47345347					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40519998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	376 bp distal
Gm63080	predicted gene, 63080	450 bp upstream
Rr406269	regulatory region 406269	1264 bp proximal
Rr501588	regulatory region 501588	1557 bp distal
Rr501589	regulatory region 501589	994 bp distal
Rr501590	regulatory region 501590	493 bp distal
Rr501591	regulatory region 501591	889 bp proximal
Tssr4586	transcription start site region 4586	1300 bp downstream
Tssr131170	transcription start site region 131170	1711 bp downstream
Tssr131171	transcription start site region 131171	1681 bp downstream
Tssr131172	transcription start site region 131172	1598 bp downstream
Tssr131173	transcription start site region 131173	1548 bp downstream
Tssr131174	transcription start site region 131174	1520 bp downstream
Tssr131175	transcription start site region 131175	1377 bp downstream
Tssr131176	transcription start site region 131176	1336 bp downstream
Tssr131177	transcription start site region 131177	1281 bp downstream
Tssr131178	transcription start site region 131178	1245 bp downstream
Tssr131179	transcription start site region 131179	1584 bp upstream
Zfpm2	zinc finger protein, multitype 2	within coordinates