rs47345620 SNP Detail

Summary

• ID
  rs47345620
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:109759313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGTGTCTC TCTGTGTCCC
  TGTCTCTCTG CAGGAGAATT TCTTTTTAGA CCTGGCAAAT CCCTTTAGAC CTCTTTCTCT
  CCTTTCCTTT GTCCCTACCA TGGCTGCTGG TCCACACTAG GAAACCGACT GCTCTCTCCT
  TTACAATTCT GCTTCTGTAG ACCTCACCAT GCTCCTTCTA ATTTAATTTT AGATCACACC
  W
  CTATAAGTGC TAAGTGATGT GAGGTCCTGT CTGGTTTCTG AGCACTTCTT TCAGCACCTT
  TAACATCTCG GCAACTTGTG AAATTTCTCT GAGACATGAC TAATTTAAAA GAGACCCAAA
  GGTCTTTGTT CATGACCTTT TGTTGAAATC TGTCTAAAAC TCTAAAATTC ATAGTGAGGA
  AAAAAAAAAG TAGCTTTGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62018195	NES17135650	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47345620					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62018195	NES17135650	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:109759313 () rs orientation: forward

Symbol	Name	Function Class
Pde4d	phosphodiesterase 4D, cAMP specific	within coordinates
Rr485916	regulatory region 485916	346 bp distal