rs47345626 SNP Detail

Summary

• ID
  rs47345626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46343517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGGCAGC AAGTAGGAAG
  GCTCAGCTCT CTTCTATTGA GAACTTGGCT CTCATGAGTG GCCTGGGGAG ACAGGCGTTG
  CTTTTTCAGG AGGCATGCAG AGAAACAACA GCCACCTGGC ATCCTTCTTG CCAGCATCTT
  TCACAAACAG CACACAACAG TAGTTCAGCT GAACAGCAGA TGACCATAAA GCACTCAGAG
  Y
  TAAGTGAGCT CTCTGAGCAG AGACAAGAAC CCTGGAGGCA CCTGGCAAAC GTAATGGTAG
  AATATATTTT TTTAACTTCT TGTTTTTCCC TCTTGACTGA AATCACCCCT TCTAGTCGCA
  TGCTTGTAGT TGATAGGGAT TTAGCAGAAG AACCCAGAAG GAGAACGAGA AGGGTAAAGG
  TATTGCTGAG GGACTTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61787361	NES17720974	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47345626					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61787361	NES17720974	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46343517 () rs orientation: forward

Symbol	Name	Function Class
Gm10113	predicted gene 10113	within coordinates
Rr272082	regulatory region 272082	917 bp distal
Rr276190	regulatory region 276190	1517 bp distal