rs47346467 SNP Detail

Summary

• ID
  rs47346467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135254419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT AAGTATCAGA AAACCCTGTA
  Y
  GAGTGCCAGC CACTCTTGCG GCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145530836	ENSMUSSNP6264810	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss319989149	CHEV_1_137223258	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47346467					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135254419 () rs orientation: forward

Symbol	Name	Function Class
Lmod1	leiomodin 1 (smooth muscle)	within coordinates
Rr12584	regulatory region 12584	1819 bp distal
Rr28593	regulatory region 28593	18 bp distal
Tssr8958	transcription start site region 8958	1861 bp downstream
Tssr8959	transcription start site region 8959	1825 bp downstream