rs47346520 SNP Detail

Summary

• ID
  rs47346520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98178592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGTGAAAGA GGCGGAGTCA CCGGGGACTC GCCCGGGGGT
  CAGAGGCTGA GCGGGGCTGG GATGCCCTCT CCAAGCTCAG AGCCACCCAA CAGCTGCCAC
  Y
  GAGGAGAGAG AGCGAGGTCC TGGGAGGACA AAGAGAGTCT CCGCAGCCGC CACAGCTGCC
  GCCGGAACTC TGGGCAAATC CCAGTGGACA GAGTCCAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61199545	NES16709298	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C		T	T	T	C
ss148904952	ENSMUSSNP5047962	ENSEMBL	ENSEMBL_Sanger	f	SNP		C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs47346520					SNP	C	C	T	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199545	NES16709298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98178592 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	within coordinates
Cpgi16083	CpG island 16083	within coordinates
Gm42759	predicted gene 42759	within coordinates
Rr615103	regulatory region 615103	219 bp proximal
Tssr1554	transcription start site region 1554	219 bp downstream
Tssr47433	transcription start site region 47433	9 bp downstream
Tssr47434	transcription start site region 47434	within coordinates
Tssr47435	transcription start site region 47435	362 bp upstream
Tssr47436	transcription start site region 47436	531 bp upstream
Tssr47437	transcription start site region 47437	566 bp upstream
Tssr51988	transcription start site region 51988	117 bp upstream
Tssr51989	transcription start site region 51989	106 bp upstream
Tssr51990	transcription start site region 51990	86 bp upstream
Tssr51991	transcription start site region 51991	within coordinates
Tssr51992	transcription start site region 51992	64 bp downstream
Tssr51993	transcription start site region 51993	237 bp downstream
Tssr51994	transcription start site region 51994	261 bp downstream
Tssr51995	transcription start site region 51995	404 bp downstream
Tssr51996	transcription start site region 51996	564 bp downstream
Tssr51997	transcription start site region 51997	602 bp downstream
Tssr51998	transcription start site region 51998	642 bp downstream
Tssr51999	transcription start site region 51999	677 bp downstream
Tssr52000	transcription start site region 52000	698 bp downstream
Tssr52001	transcription start site region 52001	718 bp downstream
Tssr52002	transcription start site region 52002	738 bp downstream
Tssr52003	transcription start site region 52003	780 bp downstream