rs47347294 SNP Detail

Summary

• ID
  rs47347294
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19194065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGACTAG CCTGGTCTAC
  ATGAGACCCT GCCAGACAGA ATGAAAGCCA AAAGAGACAG AGGTTAACAG ACATGTGCTA
  GCTAGCTCAA GCAAGCTGAT CATAGGACTA GCTATTAAGC ACGAACATTT TTAAAAGTTA
  AATTATGCAA ACATGTAATT AAGCAAATTG TATTAAAAAT TGGCAGGGGG AGGGGGTGGG
  C
  GCTGGAGAAA TGGCTCAGCA GTTAGGAACA CTGGCTACTC TTCCAGAGGA CCTGGGTTCA
  GTTCCCAGCC CTCCCCACCC CCCACACACA CATACATGGT GGCTCACAAC CATCTGTAAC
  TGCAGGTCTA TGGGACCTGA CACCCTCTTC TGGCTTCCCC AGTGACTATG TGCATGTACA
  CACACACACA CACACACACA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss148476751	ENSMUSSNP3935325	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs47347294					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19194065 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	1067 bp distal
Gm23099	predicted gene, 23099	657 bp downstream
Mark4	MAP/microtubule affinity regulating kinase 4	1319 bp upstream
Rr400149	regulatory region 400149	1083 bp downstream
Rr643146	regulatory region 643146	1330 bp distal
Rr643147	regulatory region 643147	829 bp distal
Rr643148	regulatory region 643148	1392 bp proximal
Rr643149	regulatory region 643149	1524 bp proximal
Tssr64858	transcription start site region 64858	1205 bp downstream
Tssr70918	transcription start site region 70918	1455 bp upstream
Tssr70919	transcription start site region 70919	1401 bp upstream
Tssr70920	transcription start site region 70920	1364 bp upstream
Tssr70921	transcription start site region 70921	1340 bp upstream
Tssr70922	transcription start site region 70922	1284 bp upstream
Tssr70923	transcription start site region 70923	887 bp upstream