rs47348461 SNP Detail

Summary

• ID
  rs47348461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87753865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTCTCT CAAGACATTA
  AAAGTGTAGA ACAAAACCAA AAAAGTGTAG GTCCTCTGTG GGCAAAACGA AGGAAGAAAC
  AAAAAGCAAA GTGGATTGAT CTGAGTGAGC AAATTCAGAC TTCAACTTTC AGCTAAAACA
  TTTGCTGGCC AAGCTGAGGT AGGTAGATTT ACAACATCAG AGTAAGTAGT CATACCAGGT
  Y
  GCCCTGGACA ACGGATATGG GAATTTCAGT GTTACATTAG TCATTGTAAC TGGACTGAGC
  AAGCAAGAGG CTCAGGAGTT CAAGGTCAGC CACAGCAACA AGCAGAGGCC AGACTAGACT
  ACGTGAAATC CCAGTTTTGA AAAAGCTAGA GATGTTGCTC AGTTTGTAGC TTGCTTGCTG
  GGCATAGGCC AGGTCCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60762269	NES16403488	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47348461					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60762269	NES16403488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87753865 () rs orientation: forward

Symbol	Name	Function Class
Rr371669	regulatory region 371669	209 bp upstream
Rr414853	regulatory region 414853	1165 bp distal
Rr414854	regulatory region 414854	1070 bp distal
Rr414855	regulatory region 414855	915 bp proximal
Rr414856	regulatory region 414856	1549 bp proximal
Rr414857	regulatory region 414857	1795 bp proximal
Sag	S-antigen, retina and pineal gland (arrestin)	Intron