rs47348473 SNP Detail

Summary

• ID
  rs47348473
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116679285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTCAATCCCC AAATGGGGCG GAGAAATTGA TAGAAGAGCA
  AGCGTTTACA TTTCTCTGTA TCTGGCAATC TGCACTTCAC CTGACTCTTC AATTCTACTT
  C
  TAAGTGAGAT TTGGAGGGAT TAGAAAACTA CTGTGTTTTG TTTGTTGTTC CTGAAAGGAA
  CTATTGCTCA TTGCCTTAGT AGGTCTCCAA GAACAGCCCA G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147281522	ENSMUSSNP5813149	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47348473					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116679285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14642	CpG island 14642	433 bp distal
Gm12996	predicted gene 12996	1752 bp upstream
Hpdl	4-hydroxyphenylpyruvate dioxygenase-like	580 bp upstream
Rr597993	regulatory region 597993	225 bp distal
Tssr42929	transcription start site region 42929	1201 bp upstream
Tssr42930	transcription start site region 42930	1182 bp upstream
Tssr42931	transcription start site region 42931	601 bp upstream
Tssr42932	transcription start site region 42932	589 bp upstream
Tssr42933	transcription start site region 42933	567 bp upstream