rs47351374 SNP Detail

Summary

• ID
  rs47351374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164721951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCGCGCG CGCCAGACTT
  CCCGCCCCCG CTGGGCTTGC GGGAGGGGCA GGCGGGAGCG CGCTGGGAGC GGGGTGGGGG
  AGGGTTCCCG TCTGTGCGCC TGCGTGGCTC CGCCCACCAG AGCCGGGGCG TTATGATTGG
  TACTCTGGTA TGTGATCCCG CCCATGTTCC TCCAATCCCG GAATCGGATG CATTTTCTAG
  Y
  CCGAGTTCCG CTGCTTGCGC AGATACAGTT GTTTGTCTCT AGACTACGCT GCGCTTCTCC
  GACTTTGGTA TGCGTGGGGG TCCGGAAGGC ACAGGCTAAG TGAAAACAGT CACTTAATGG
  GAGCAGCAGC GAGAGTCCAC AGAACGCTAG ACTACGGTGC AGGGGTCAGA TGGTTCTGAC
  GTAGGTGTCA GGACGGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148232724	ENSMUSSNP879182	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47351374					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164721951 () rs orientation: forward

Symbol	Name	Function Class
4930445K14Rik	RIKEN cDNA 4930445K14 gene	within coordinates
Cpgi12676	CpG island 12676	within coordinates
Gm75548	predicted gene, 75548	232 bp upstream
Pcif1	phosphorylated CTD interacting factor 1	Intron
Rr397480	regulatory region 397480	520 bp downstream
Rr397481	regulatory region 397481	within coordinates
Rr569749	regulatory region 569749	1412 bp distal
Rr569750	regulatory region 569750	1347 bp distal
Rr569751	regulatory region 569751	664 bp distal
Rr569752	regulatory region 569752	243 bp distal
Rr569753	regulatory region 569753	628 bp distal
Rr569754	regulatory region 569754	within coordinates
Tssr21683	transcription start site region 21683	633 bp downstream
Tssr21684	transcription start site region 21684	within coordinates
Tssr21685	transcription start site region 21685	14 bp upstream
Tssr27592	transcription start site region 27592	227 bp upstream