rs47352293 SNP Detail

Summary

• ID
  rs47352293
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45292150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAAAGCT GACACTACAC
  ATCCTACAGG CCAAGAAAGT GGTGACCACG CTGAAGCGTC ATCCTGGCTT TTTTTGTTTG
  TTTGTTTGTT TGTTGAGACA AACTTACTAT ATGTGCCAAG GTTGTCTTTG AACTCCCCAT
  CCTGCCCCAG GCTCTCTGGA GCTAGGATGA CAGGTGTGGT GAGCCACCAA ACCACGAAAC
  Y
  TGGCCTTACT CACTCTTTCA GGAATCTCCC AAGAACTCCC AACATTGGAA GGAGCCTAAG
  GTCAGGGGGA ACTTGACATA TCACCTGTAC ATGCCTCCAG AACAGAGACA AGGGCCCAGG
  GCAAATCTGC AAGTTGAGAG GTCAACCCTG GGTCCCCCGG ACCCACCTCT TTGGGAAAAG
  AATTCACAGA GACCACATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61003173	NES16126516	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47352293					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003173	NES16126516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45292150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19076	CpG island 19076	312 bp proximal
Cpgi19077	CpG island 19077	1346 bp proximal
Mamstr	MEF2 activating motif and SAP domain containing transcriptional regulator	within coordinates
Rr400317	regulatory region 400317	938 bp upstream
Tssr66603	transcription start site region 66603	939 bp downstream
Tssr66604	transcription start site region 66604	1227 bp upstream