rs47353487 SNP Detail

Summary

• ID
  rs47353487
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29979251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATC AAAGACACAC TGGAATGAAA
  K
  GGATAAGTGT CTTAGGTCAC TCACT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60991481	NES16140570	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	G	T	T	G	G		T	G	G	G		G
ss322132937	CHEV_7_31064845	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47353487					SNP	G	T	T	T	T	G	T	T	G	G	G	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991481	NES16140570	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29979251 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	1207 bp upstream
Cpgi18786	CpG island 18786	within coordinates
Gm71678	predicted gene, 71678	1995 bp downstream
Rr400235	regulatory region 400235	440 bp upstream
Rr644765	regulatory region 644765	within coordinates
Rr644766	regulatory region 644766	217 bp proximal
Rr644767	regulatory region 644767	583 bp proximal
Rr644768	regulatory region 644768	1072 bp proximal
Tssr65667	transcription start site region 65667	261 bp upstream
Tssr65668	transcription start site region 65668	360 bp upstream
Tssr65669	transcription start site region 65669	708 bp upstream
Tssr71721	transcription start site region 71721	509 bp downstream
Wdr62	WD repeat domain 62	within coordinates