rs47355451 SNP Detail

Summary

• ID
  rs47355451
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62721786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAACTCA CTCTGTACAC
  CAGGCTGGCT TCGAACTCAG AAATCCGCCT GACTCTGCCT CCCGAGTGCT AGGATTAAAG
  GCGTGCGCCA CCACGCCCGG CTGAGTCAGG GAATCCTTAT CGCTGCTCCA GCATTAAGTC
  TTTCTTAAAG TCACATTAAT TTTAGTGGGT CAGAAACGTA CCCAGTTCAG TTCCCAAAGG
  R
  CAACTGGAGC CGGACACTTC TTTCCTGACT CATTCCTGTG GATTAATGGG CGAACACTGG
  AGGTGAAGGA GAGAGTAAGA GAAAGGGGAA GTTGCTTTTT CAGACTGGTC TCACCATGCA
  GCCCTAGCTG CCCTGAAACT CACGGAGATC TCTATGCCTT TACCAACCCA GCGCTGGAAT
  AATCATAGGC GAGCACACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52348691	NES15281833	PERLEGEN	MM_PANEL2	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs47355451					SNP	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52348691	NES15281833	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62721786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1638	CpG island 1638	81 bp proximal
Gm51805	predicted gene, 51805	within coordinates
Rr384811	regulatory region 384811	within coordinates
Rr432701	regulatory region 432701	1200 bp distal
Rr432702	regulatory region 432702	within coordinates
Tet1	tet methylcytosine dioxygenase 1	within coordinates
Tssr93732	transcription start site region 93732	335 bp downstream
Tssr97890	transcription start site region 97890	1405 bp downstream
Tssr97891	transcription start site region 97891	1454 bp downstream