rs47356114 SNP Detail

Summary

• ID
  rs47356114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24097538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCCTCT GGCATCCAAA
  TGTGCATTGC TGCATGTGTG CGCACACATC CTAGAGGGCA CACATCCCGC TTATAACTCA
  GTGAATCTGG TGGCATTGAG CACTCTTCAT AAACAGCCCT CCAACCAATC ACTGCCCTGA
  TGGTTACCTT GAATATGAAA AACTCGTGCT TTCTGTCTCC AGGCTTCAAC AATAAAAAAA
  Y
  TCTTCACGGG CTGGAGAGAA GGCTCAGCGG TTAAGAGCAC TGGCTGCTCT TCCAGAGGTC
  CTGAGTTCGA TTCCCAGCAA CCACATGGTG GCTCACAACC ATCTGTAATG GGATCTGATG
  CCCTCTTCTG GTGTGTCTGA TGACAGCTAC AGTGTACTCA CTATATATAT ATCCATCCTT
  TATAAGCTGG CCATGTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss60983366	NES16154601	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs47356114					SNP	C	T	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60983366	NES16154601	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24097538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	1073 bp proximal
Gm74022	predicted gene, 74022	898 bp downstream
Rr643435	regulatory region 643435	730 bp distal
Rr643436	regulatory region 643436	115 bp proximal
Rr643437	regulatory region 643437	1016 bp proximal
Rr643438	regulatory region 643438	1517 bp proximal
Rr643439	regulatory region 643439	1812 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	1568 bp upstream
Tssr64959	transcription start site region 64959	1493 bp upstream
Tssr64960	transcription start site region 64960	1561 bp upstream
Tssr64961	transcription start site region 64961	1700 bp upstream
Tssr64962	transcription start site region 64962	1846 bp upstream
Tssr64963	transcription start site region 64963	1864 bp upstream
Tssr64964	transcription start site region 64964	1900 bp upstream
Tssr71075	transcription start site region 71075	1745 bp downstream