rs47356909 SNP Detail

Summary

• ID
  rs47356909
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57526109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGATCTCA TAGGGGTCTG
  CCACACAGAT CCCTGTCGGC AGAAAGAAGA GTGTGAAGGA TCCAGGGTGC GAGGGCTGTG
  CAGGGAGGCA AAGGCAGGCT TCTGGTTCAA GTTCCCTAGC TGTCCATGGC TGATCCTATC
  TGCAGAAAGG TGAAGACTAA ACATGCACAT GTGATTGGCA GATCCTAGAG GCGATGGTGT
  S
  GCAGCCAGTT GTGTCTGACT TCATGAGTTT ACATGTGCGC ATGTGTGCAT GGGTGCACAC
  GCATGTGGAG GCCAAAGGTT GACCCTGAGT GTTGTCTTCA ATTGCTTCTC TACCATATTT
  AATTTTAGCT ATGTGCACAC CACACACACA CACACACACA CACACACACA CACACACACA
  CACACACGAG TCTCCGCGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62812229	NES17355852	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47356909					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62812229	NES17355852	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57526109 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Gm65552	predicted gene, 65552	within coordinates
Mir6978	microRNA 6978	1881 bp upstream
Rr405394	regulatory region 405394	75 bp upstream
Rr529295	regulatory region 529295	228 bp proximal
Tssr148927	transcription start site region 148927	1939 bp upstream
Tssr148928	transcription start site region 148928	1210 bp upstream
Tssr148929	transcription start site region 148929	965 bp upstream
Tssr148930	transcription start site region 148930	912 bp upstream
Tssr148931	transcription start site region 148931	584 bp upstream
Tssr148932	transcription start site region 148932	441 bp upstream
Tssr148933	transcription start site region 148933	217 bp upstream
Tssr148934	transcription start site region 148934	1071 bp downstream
Tssr148935	transcription start site region 148935	1932 bp downstream
Tssr148936	transcription start site region 148936	1949 bp downstream
Tssr148937	transcription start site region 148937	1972 bp downstream