rs47357887 SNP Detail

Summary

• ID
  rs47357887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127482806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGTGGTG ACCCCAACAA
  TAAAACCATG TTCCATAACT GATTTTGCTA GTTATGAATG TTGTGTAATG TCAATATCTG
  TATTTTCTGA TGGTCTTAGG TGACCCACAG GCTGAGAACC ACTGGGTTAA AAGCATTTGT
  TGCTCTCACA GATTTCAGGT CCCAGACCTT TGGGTGGCTT ATAGTCTTCT GTAACTCCAG
  Y
  TCCACGGGCA TATGATATCC AATTCTGGCC TCCATGGGCA CCTGCACTCA TACACATAGA
  TTAAAAAGAA AAAAAGAAAA AACAAAAAAG CCCTCCAAAT GTCATTGTCT CCTCCAGCTT
  TACCTGATCA CACAGATTGG TTGTGTCAGT TGTGCTTCTA AAGATTGCAG CATTATTTTC
  CATTCACACC CCTGTTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135869018	ENSMUSSNP3067066	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320956098	CHEV_3_127392075	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47357887					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127482806 () rs orientation: forward

Symbol	Name	Function Class
Alpk1	alpha-kinase 1	within coordinates
Tssr35586	transcription start site region 35586	605 bp upstream
Tssr35587	transcription start site region 35587	1591 bp downstream