rs47358062 SNP Detail

Summary

• ID
  rs47358062
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56918588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTT GAGAGCACTT TCTTCATCCA
  M
  CTTCCTTATA ACTTGTTCCA GACCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62806697	NES17364177	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	A	A	A	C	C	A	C	A	A	C
ss145807865	ENSMUSSNP461984	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47358062					SNP	C	C	A	A	A	C	A	A	A	C	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62806697	NES17364177	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56918588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9367	CpG island 9367	1289 bp distal
Cpgi9368	CpG island 9368	1647 bp proximal
Gm56912	predicted gene, 56912	624 bp downstream
Micos13	mitochondrial contact site and cristae organizing system subunit 13	1817 bp upstream
Rpl36	ribosomal protein L36	1828 bp upstream
Rr340044	regulatory region 340044	787 bp distal
Rr340045	regulatory region 340045	12 bp proximal
Rr340046	regulatory region 340046	1612 bp proximal
Rr370299	regulatory region 370299	1645 bp downstream
Tssr5177	transcription start site region 5177	1910 bp upstream
Tssr145313	transcription start site region 145313	1672 bp downstream
Tssr145314	transcription start site region 145314	1767 bp upstream
Tssr145315	transcription start site region 145315	1804 bp upstream
Tssr145316	transcription start site region 145316	1848 bp upstream
Tssr148822	transcription start site region 148822	1902 bp upstream
Tssr148823	transcription start site region 148823	1873 bp upstream
Tssr148824	transcription start site region 148824	1769 bp upstream
Tssr148825	transcription start site region 148825	1754 bp upstream
Tssr148826	transcription start site region 148826	1649 bp upstream
Tssr148827	transcription start site region 148827	1617 bp upstream
Tssr148828	transcription start site region 148828	1583 bp upstream