rs47358244 SNP Detail

Summary

• ID
  rs47358244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96243165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCCCTTC TCCAGCCGCC
  TCCTCGGTCC GGGCCTCCGA GGTCGGATCA CCATCAGGTG GGTAAACGTA TTAGGGGCGG
  GGTGAGGGGC AGTTGGAAGA GAAGGGGAGA ATGTGAGGTG ATGGGGCTCC TGGTGGGGTT
  CCCTAGGTCG ACGGATCTGG GGCGAGGGAA GCAGAGTATC CCGCTGGGGT TCAGGCCTAG
  Y
  CACTGTTAGC TTCCCCACCC CCAGAAAATT TTGGAAGCTG ATTGAGGGTG GGGAGGATGC
  TTTTTTTTTT TTTTTTTTTT TAAATGTGCT TAGAAAAAAA TGATTCGATT GAAGGGTTTC
  CCCGGTTTCT GTGTAGAGGA ATGAAGCGTG TCTGGGATTG AATCTGGAGC CTGGAAAAGA
  TGCGATGCCT CTAGCTCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132677046	ENSMUSSNP6661345	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47358244					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96243165 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	163 bp distal
Cpgi3657	CpG island 3657	329 bp proximal
Hoxb2	homeobox B2	within coordinates
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr141	regulatory region 141	1891 bp distal
Rr455384	regulatory region 455384	1871 bp distal
Rr455385	regulatory region 455385	698 bp distal
Tssr104519	transcription start site region 104519	704 bp downstream
Tssr104520	transcription start site region 104520	465 bp downstream
Tssr104521	transcription start site region 104521	431 bp downstream
Tssr104522	transcription start site region 104522	371 bp downstream
Tssr104523	transcription start site region 104523	321 bp downstream
Tssr104524	transcription start site region 104524	269 bp downstream
Tssr104525	transcription start site region 104525	201 bp downstream
Tssr104526	transcription start site region 104526	525 bp upstream
Tssr104527	transcription start site region 104527	547 bp upstream
Tssr104528	transcription start site region 104528	736 bp upstream
Tssr104529	transcription start site region 104529	788 bp upstream
Tssr104530	transcription start site region 104530	816 bp upstream
Tssr104531	transcription start site region 104531	985 bp upstream