rs47359730 SNP Detail

Summary

• ID
  rs47359730
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23792765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGGCAATG AAAACCTGCA
  CAACTGAAAA TCTGGTCCCA GCAAGTAAGA GGAGCTCAGA GCAATAAACA ACCATGAAAA
  AGTCTCAAGA GAAACTTGGT TTCAAGAACA AAACAAAAAT GTAAGCTACA CCATAATCAT
  TATATCAAAC ACAAGGGCTT ACTCCTTGCA CAACCAAGGT ACTTCTCCCC CCCCCCCCAC
  C
  AGTCCCTAAA GATAGAGAAG GAACCCATGG GAGGATAAAT CTGGAATCAG GTTACATAAC
  CACAGAGCAG GAGTAAAGCC CGATTAGATT AAGTCAGTGC TCCACACTAA GGCTCAGAGC
  TGATTATATA TATATATAAA ATCGGCATTA ACATGCATAT ATCCATACAA AGACATAAAC
  ACAATTAAAA ATAATAAAAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148061222	ENSMUSSNP1150136	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47359730					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23792765 () rs orientation: forward

Symbol	Name	Function Class
Rr117577	regulatory region 117577	565 bp distal
Rr117578	regulatory region 117578	636 bp proximal
Srpk2	serine/arginine-rich protein specific kinase 2	within coordinates
Tssr1438	transcription start site region 1438	935 bp downstream
Tssr50280	transcription start site region 50280	1140 bp upstream