rs47362315 SNP Detail

Summary

• ID
  rs47362315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:57564588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCATTA CGTTGTAATC
  TCACTTCTAA TTATATTTTA TCAGTTTATT ATTTCTGCAA CTTGAGAATT AAATTAAAAA
  CATATTGGGG GAAAAAAACT AAATCAACAA CAGTTGTTCT TTATTCTTGT TTTGTATTAG
  CAACTGTGTG ATTACTGGGG CCTGAGTTGC ACAGGGAACC AGCATGAAGG GGTTGCTTTC
  Y
  GCAGTAATGG AGCAGAGTGG GTAGCCTCCA ACACATTGGG GCTGTAGAAT ATGATTTACC
  AGCTCTGGAG CTCTGGGGTC TGCAATTTCA TAAATATAAG TGACAAATTA TCAATAAATC
  ACTCTCTGGT TCACCATAAT GCATAATGTT TATTGAAACC CAGTTCCAAT AAATACAAGT
  CGCCCTTTTT AGCCAAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60617322	NES16286651	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	T		C	C	T	C
ss144926120	ENSMUSSNP7192247	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C									T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47362315					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60617322	NES16286651	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:57564588 () rs orientation: forward

Symbol	Name	Function Class
Rr678	regulatory region 678	within coordinates
Rr663682	regulatory region 663682	287 bp distal