rs47363093 SNP Detail

Summary

• ID
  rs47363093
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:134486115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGG CAAGGCCACG CCCAGCCACC
  M
  TGACCACGCC CCCAACGCAC TGTGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320513936	CHEV_2_134469931	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47363093					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134486115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12319	CpG island 12319	within coordinates
Rr55684	regulatory region 55684	within coordinates
Rr397337	regulatory region 397337	within coordinates
Tmx4	thioredoxin-related transmembrane protein 4	74 bp upstream
Tssr26507	transcription start site region 26507	153 bp upstream
Tssr26508	transcription start site region 26508	137 bp upstream
Tssr26509	transcription start site region 26509	86 bp upstream
Tssr26510	transcription start site region 26510	52 bp upstream
Tssr26511	transcription start site region 26511	29 bp upstream
Tssr26512	transcription start site region 26512	7 bp upstream