rs47363798 SNP Detail

Summary

• ID
  rs47363798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119898286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGTTGCCC CAGCAGCTAA
  GTCAGGGGCT ACTCAGCTTC CCCTGGGGCT CAGCTCCTCA CCCCGATCCT GTCCCCACTT
  CAGCTCTTGT TTTTTTGGCT TTTATTTGTA TGAATTCCTT GGGAACTTCA CATGTATTTC
  GATCACAATC CCTCCTCTAC CCCTCTCCTC CCAGAACCAC CCCCATCCTA TTCCAGCTCA
  Y
  CGACTCCGTG TCCTTATTCA TTTCTGCTAA ACTTTTTGTT TTCGAGCTTT CTTTTTAATT
  ATGTATATGT GCCCAGGGAG GCTAGAGAAC TCAGATCTCC CTGTGGCAGT CGTGAGTTGC
  CCATCACTAT AGGTGCTGGG AGTCGAACTT GTGTCCTCTG CAAGAGCAGT GTGTGCTCTT
  AGCCACCGAG CCATTTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss137051605	ENSMUSSNP432893	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47363798					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119898286 () rs orientation: forward

Symbol	Name	Function Class
Cx3cr1	C-X3-C motif chemokine receptor 1	924 bp upstream
Gm33858	predicted gene, 33858	within coordinates
Tssr92011	transcription start site region 92011	929 bp upstream
Tssr92012	transcription start site region 92012	919 bp upstream