rs47365317 SNP Detail

Summary

• ID
  rs47365317
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66902693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTT CTAACTTCGG AAAGCTCTCT
  T
  AATGTCGATA AATGTATGAG TACTC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144520359	ENSMUSSNP2543017	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss319758741	CHEV_1_66910108	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47365317					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66902693 () rs orientation: forward

Symbol	Name	Function Class
Acadl	acyl-Coenzyme A dehydrogenase, long-chain	257 bp upstream
Cpgi339	CpG island 339	within coordinates
Rr412477	regulatory region 412477	1405 bp distal
Rr412478	regulatory region 412478	268 bp distal
Rr412479	regulatory region 412479	within coordinates
Tssr12011	transcription start site region 12011	275 bp upstream
Tssr12012	transcription start site region 12012	249 bp upstream
Tssr12013	transcription start site region 12013	237 bp upstream
Tssr12014	transcription start site region 12014	219 bp upstream
Tssr12015	transcription start site region 12015	199 bp upstream
Tssr12016	transcription start site region 12016	184 bp upstream