rs47365546 SNP Detail

Summary

• ID
  rs47365546
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:57436868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCTCTG CGCTGGTTTA
  ACAGCAGAGT TACTACTACT GTGTCTTTCA GATCATTTAG ATGAGCAGTC ATTTGAGCAG
  GAACAAATAG CACTAATGTT AACCAGTCAT TAATTGTAAG TGTACTATAT AATCTCAGAT
  CAAGAATCTG TGGCAATGTG GCTGTGGGTA TGGTTGGTTC TCCAATGTAT TCTTTAAATA
  K
  TTTACAATAA TAAAAGCAAG CATCCCAAGT GCTTTTAACT TCTCTGCCAG AATGTAATGG
  TCCTATCTTG CTGCAGCTGT GGAATTCCTT ATTTAAAACC TAAAGATCTT ACTGATGTAT
  GAAAAAACAG CAATTCTGCA TTTTCATCAA GACTTCAATT TTCTTGATGT GCCGTTTTGT
  GCAGACACAA AAGTAATCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136519670	ENSMUSSNP6702551	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47365546					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57436868 () rs orientation: forward

Symbol	Name	Function Class
Cox5a	cytochrome c oxidase subunit 5A	Intron
Gm26631	predicted gene, 26631	1702 bp downstream
Tssr85310	transcription start site region 85310	630 bp downstream