rs47367185 SNP Detail

Summary

• ID
  rs47367185
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61754000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCACTGG AGTACAGAGT
  CAGCCCGAGA GACTGCCCAC AGGGTAACAG ATGGCCATCC GTGCAGCCCT CACCTCTGGC
  CGCCAACATC CTTACTTTGC AGAAAGCAAA GAGAACAGGG CTGAGGATGC GTCTTACCAT
  CTTCCTGCTT CTGCTCTTTA GGCTTTTGTT AGTCAGAGTG GGGACAAGGC ACCGGGGTCT
  Y
  TCATCTGCAT CAGGACTGAG AGTTCAAGGA AGGACACAGC TCAGGCAGGT AGAGAGTGTA
  AACGGGGACT CAAAACCCAC TTCTCTTGCC AGTCCTCAGA ATCCAGGGGT CGTAGTACCC
  ACTCTGGCTG GGAACAACCT GCCAGACAAA CTGGGACAAC TCTCAGGACG CTGCACTGGC
  TAGAGTCATC AGAGAGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61280667	NES16779855	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		C
ss323330211	CHEV_10_61380969	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47367185					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61280667	NES16779855	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61754000 () rs orientation: forward

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates
Gm30121	predicted gene, 30121	within coordinates
Rr215608	regulatory region 215608	600 bp distal
Rr215609	regulatory region 215609	1801 bp proximal