rs47368855 SNP Detail

Summary

• ID
  rs47368855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135676018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATTTCCT TGATATTCAG
  GAAAGAGCAG GAGAGCCCTG GGGGGTTGCA GTCTTAGACT AAGAGTCAGC AGACCACAGA
  ACATGTACCC TCAAGGAGTG TGGTCAGAGA GGACATCTGG ATCTGGCCAT GCTCAGACAG
  CAAGCCAACA GACCCATGGC GCATGGAGCC CGTGGCCAGC TCTTTTGGTT TGGCCCATGG
  Y
  TTTGAAGGCC TTTTGATCTT GAGGAATGGG TCAGGAGTGT GGAATGGGAA TGAGTGCTTG
  GCCAAGTCTG GACCACGGGA CCTCTGCATT GCCGCTGAGA TTATCCCCAT CACACAGACC
  AAGGAAACGG GAGTCCATAG GAATGAGTAT TTTCTGTACC CGTATCTTCT AGCTAGGAAG
  CAAGCCAGGA GCCCAGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60803835	NES16474113	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47368855					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803835	NES16474113	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135676018 () rs orientation: forward

Symbol	Name	Function Class
Csrp1	cysteine and glycine-rich protein 1	within coordinates
Rr419262	regulatory region 419262	1513 bp distal
Rr419263	regulatory region 419263	600 bp distal
Tssr222	transcription start site region 222	1482 bp downstream