rs47370034 SNP Detail

Summary

• ID
  rs47370034
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCAAGGAA ATATATAAAG GAGAATCTTA GCTCCACTCT
  CAGCCAAGCC CTTCCTGGCA AGATGAGTCC CACCAGCTTC TTCCTCCTTA CATTGCTCCT
  Y
  GTTCTGGTGA CAGAAGCAAG GGGAGCCCGT GGTGAGTGGC AATTTCGTTC TGTAGGAAAG
  ATGTTTGAGA ACAATGTTCT CAAAAGGGTC TGCCCAGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148223054	ENSMUSSNP1170497	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47370034					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174744 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	505 bp upstream
Tssr745	transcription start site region 745	548 bp upstream
Tssr746	transcription start site region 746	559 bp upstream
Tssr747	transcription start site region 747	572 bp downstream
Tssr748	transcription start site region 748	593 bp upstream
Tssr749	transcription start site region 749	625 bp upstream
Tssr750	transcription start site region 750	638 bp upstream
Tssr751	transcription start site region 751	692 bp upstream
Tssr752	transcription start site region 752	761 bp upstream
Tssr753	transcription start site region 753	768 bp upstream
Tssr754	transcription start site region 754	1440 bp upstream
Tssr21562	transcription start site region 21562	88 bp downstream
Tssr21563	transcription start site region 21563	79 bp downstream
Tssr21564	transcription start site region 21564	48 bp downstream
Tssr21565	transcription start site region 21565	35 bp downstream
Tssr21566	transcription start site region 21566	24 bp downstream
Tssr21567	transcription start site region 21567	12 bp downstream
Tssr21568	transcription start site region 21568	3 bp downstream
Tssr21569	transcription start site region 21569	471 bp upstream
Tssr21570	transcription start site region 21570	533 bp upstream
Tssr21571	transcription start site region 21571	564 bp upstream
Tssr21572	transcription start site region 21572	581 bp upstream
Tssr21573	transcription start site region 21573	610 bp upstream
Tssr21574	transcription start site region 21574	674 bp upstream
Tssr21575	transcription start site region 21575	1452 bp upstream
Tssr21576	transcription start site region 21576	1468 bp upstream
Tssr21577	transcription start site region 21577	1487 bp upstream
Tssr27433	transcription start site region 27433	529 bp downstream
Tssr27434	transcription start site region 27434	552 bp downstream
Tssr27435	transcription start site region 27435	580 bp downstream
Tssr27436	transcription start site region 27436	599 bp downstream
Tssr27437	transcription start site region 27437	620 bp downstream
Tssr27438	transcription start site region 27438	650 bp downstream
Tssr27439	transcription start site region 27439	664 bp downstream
Tssr27440	transcription start site region 27440	674 bp downstream
Tssr27441	transcription start site region 27441	729 bp downstream
Tssr27442	transcription start site region 27442	737 bp downstream
Tssr27443	transcription start site region 27443	800 bp downstream
Tssr27444	transcription start site region 27444	809 bp downstream
Tssr27445	transcription start site region 27445	1425 bp downstream
Tssr27446	transcription start site region 27446	1469 bp downstream
Tssr27447	transcription start site region 27447	1564 bp downstream