rs47370174 SNP Detail

Summary

• ID
  rs47370174
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52210767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGAGAGA GAAAGAGAGA
  AAGAGAGAAA GAAAGAAAGA AAGAAAGAAA GAGAAGAGAG AGAGAAAGAA AGGAAGAAAG
  GAACAAAGAA AGAAGGAAAG AAAGAAAAGA AGGAAAAGAA AACCTTGCTT TGACCCAAGA
  ATCAAGTGAC TTTCACAAAA TAGTTTGGAG ATTGGGACAG AAATGAGATG ACCTGGGACA
  Y
  GTTCAGGTCT CTTCCAGAGG GACAGAACTA GCTTGAGCTC ATCTTTTGAA AACCAAATAG
  GCATTCCTAT TTTCAAGTAA TTGTGAAGAT GCCTGGAGTA AGACTCTAGT TCTAGAAAAT
  TCGTTATAGT TACACTAAAC TGTGGCTCAT GAACCATGAG CAGGTTTCAC AGGAGCCTTG
  CAGAACAACT TTTCTTTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60261843	NES15764084	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47370174					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60261843	NES15764084	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52210767 () rs orientation: forward

Symbol	Name	Function Class
Gm20098	predicted gene, 20098	within coordinates
Rr335418	regulatory region 335418	within coordinates
Rr335419	regulatory region 335419	1834 bp proximal
Rr370289	regulatory region 370289	340 bp upstream
Rr405357	regulatory region 405357	56 bp upstream
Tssr145177	transcription start site region 145177	466 bp upstream
Tssr148690	transcription start site region 148690	181 bp downstream
Tssr148691	transcription start site region 148691	211 bp downstream