rs47370510 SNP Detail

Summary

• ID
  rs47370510
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41287189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT AGAATAATAT GGTTTGGATG
  T
  ATTGAAAAGT TTAGTATGTG TTATT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136353026	ENSMUSSNP1132150	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322925107	CHEV_9_41183976	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47370510					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41287189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21612	CpG island 21612	355 bp proximal
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	633 bp upstream
Rr677030	regulatory region 677030	409 bp distal
Rr677031	regulatory region 677031	37 bp proximal
Tssr84498	transcription start site region 84498	499 bp upstream
Tssr84499	transcription start site region 84499	519 bp upstream
Tssr84500	transcription start site region 84500	573 bp upstream
Tssr84501	transcription start site region 84501	595 bp upstream
Tssr84502	transcription start site region 84502	1005 bp upstream