rs47371380 SNP Detail

Summary

• ID
  rs47371380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:49781250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCACTC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACAGAGTGAG
  CTTAGCTAAA AGCCCCTCCC CTGATACCCT GCTCTATAAA TGATATGAAA GTGCAGTGGA
  AAAAACCCAA CTGAATAGTC TCCTCTAAAA AGACCCCTCC ATTCTCTGCT TCATTGTTTC
  R
  CAAAATGTCA ATTAGCAAAT TTACCTGTGA AATTTTCTCA AAAGACATAC TCCAAAGATT
  ATACCACACC CTGTGAGCCA CCACACCCTG TGAGCCGCCA CACCTCTCTG AATGCCAAAG
  AAACCATGCT GAATAGACTC AGGGCCTCCA GCCTCAGAAA AGTGCCCACC AAGTCCTTTG
  GCTCTTGCCA ACTTAAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
ss61154610	NES16657895	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
rs47371380					SNP	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61154610	NES16657895	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:49781250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15849	CpG island 15849	320 bp distal
Gm71615	predicted gene, 71615	within coordinates