rs47372930 SNP Detail

Summary

• ID
  rs47372930
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:111860990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAATGATA GCTACACTTC
  ACAAATAGAG CACAATCATT TATCGATCCA ACCCACTCTC TCCTTGCTGG CAAATCAAAA
  CATGATCAGA AGTTTGTTTG GCAAGTTCAG ACAAAATAGA ATGATCTGTG TGATTTGGCT
  GACTAGTAAT CTCAAAAGCT GTGTCTACAC TTTGCCAGAT CACAAAATGC AAATGAGCTA
  Y
  CCATGATTCA TTATTCAGTA CCACACTCCA TGAAATGAGG ATAACAATAA GTGCCTACTA
  CTGCACTAGA TTTTTGTTGA GATAAGTTTT TTTTTCTTAA CTACTGCAAA GTACTCACAA
  TGTCTGGCAT GTAACGAATG CTTTAATATA TAATCTATCA CTTTTATTAT CTAATATACC
  GGTACCATTT AAGAAACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss134277779	ENSMUSSNP176331	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325913362	CHEV_X_110064902	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47372930					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:111860990 () rs orientation: forward

Symbol	Name	Function Class
Rr2637	regulatory region 2637	990 bp distal
Rr6449	regulatory region 6449	1238 bp distal