rs47373647 SNP Detail

Summary

• ID
  rs47373647
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152683729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG CCTGGAGCGC CTACCCGGCA
  A
  CTCTGAGAGA GACACCTTGA ACTAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145735402	ENSMUSSNP5742793	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47373647					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152683729 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	within coordinates
Rr13099	regulatory region 13099	1872 bp proximal
Rr28716	regulatory region 28716	within coordinates
Tssr9423	transcription start site region 9423	188 bp downstream
Tssr9424	transcription start site region 9424	152 bp downstream
Tssr9425	transcription start site region 9425	102 bp downstream
Tssr9426	transcription start site region 9426	80 bp downstream
Tssr9427	transcription start site region 9427	62 bp downstream
Tssr9428	transcription start site region 9428	44 bp downstream
Tssr9429	transcription start site region 9429	19 bp downstream
Tssr14234	transcription start site region 14234	332 bp downstream
Tssr14235	transcription start site region 14235	1946 bp downstream