rs47373689 SNP Detail

Summary

• ID
  rs47373689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127584314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC CCGGCCGTAG CCGGGTCACA
  R
  GAAAGCCCAG CGTCGTTGTG ATCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135871371	ENSMUSSNP3434155	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320956927	CHEV_3_127493583	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47373689					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127584314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	537 bp distal
Cpgi13801	CpG island 13801	within coordinates
Gm56817	predicted gene, 56817	408 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr584860	regulatory region 584860	743 bp distal
Rr584861	regulatory region 584861	846 bp distal
Rr584862	regulatory region 584862	419 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	150 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1463 bp downstream
Tssr31595	transcription start site region 31595	1451 bp downstream
Tssr31596	transcription start site region 31596	1418 bp downstream
Tssr31597	transcription start site region 31597	1378 bp downstream
Tssr31598	transcription start site region 31598	1355 bp downstream
Tssr31599	transcription start site region 31599	856 bp downstream
Tssr31600	transcription start site region 31600	788 bp downstream
Tssr31601	transcription start site region 31601	736 bp downstream
Tssr31602	transcription start site region 31602	682 bp downstream
Tssr31603	transcription start site region 31603	664 bp downstream
Tssr31604	transcription start site region 31604	540 bp downstream
Tssr31605	transcription start site region 31605	26 bp downstream
Tssr31606	transcription start site region 31606	135 bp upstream
Tssr31607	transcription start site region 31607	373 bp upstream
Tssr31608	transcription start site region 31608	441 bp upstream
Tssr31609	transcription start site region 31609	492 bp upstream
Tssr31610	transcription start site region 31610	601 bp upstream
Tssr31611	transcription start site region 31611	709 bp upstream
Tssr35598	transcription start site region 35598	907 bp upstream
Tssr35599	transcription start site region 35599	825 bp upstream
Tssr35600	transcription start site region 35600	797 bp upstream
Tssr35601	transcription start site region 35601	764 bp upstream
Tssr35602	transcription start site region 35602	447 bp upstream