rs47373902 SNP Detail

Summary

• ID
  rs47373902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114292870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGAGGTG GGTGCAGGTG
  AGGATTGTCT CTTTTCTAGG TGAGGGACCC TGGCTCAGAA TGAGGTCAGA ATCTGCCCAG
  GATAACGTTG TTCTTAAGTA TCAGAGCATC CCACTCTCTG CCCCAGGCTC TCAGTGAAGA
  CGGCACGGCA CGTGTGCTGC ATGCGACATT GGGCTTCTGG GTACTCAGAC AGGAAGCATA
  R
  TGGATACCTG GTCCCCCTGC ATCAGGCTGC AAGTAGGAGT GTCTTTGCAG AAATACCATG
  GCCTGCGATA CCCTTGTCCC CATAGGCAGG GGTGTGGTTC AGCCATCCCC AGGGGCAGTG
  TTTACCCTAG TGGTTAAAGT TGGCTACGTG CTACCCTTTT GGCAGCCAGG GAGCCCTTGG
  CCACCCACTC TCTATTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
ss60825952	NES16029819	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	PWD/PhJ
rs47373902					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60825952	NES16029819	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114292870 () rs orientation: forward

Symbol	Name	Function Class
Acacb	acetyl-Coenzyme A carboxylase beta	within coordinates
Rr108154	regulatory region 108154	131 bp proximal
Tssr48071	transcription start site region 48071	617 bp upstream
Tssr48072	transcription start site region 48072	644 bp upstream
Tssr48073	transcription start site region 48073	662 bp upstream