rs47374858 SNP Detail

Summary

• ID
  rs47374858
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101129022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGTACA CAGGGAGCAC
  GTGCAGCACC CCCCAGGGAG CCACACAGTA TGCCCACTTC TGCTTGGGGT GATGCAAGAT
  TCTGCTTTTC CAGCATGAGG CAGCCAGTGA CGTGAGGGAG GCACCAGGAA TGCAGGGACT
  GGTAGAGGCC TGCATGGGAA AGCATTGTGT GTTACCAATG AGTGATCTGA GTGATCAATG
  M
  GTGGGCTGAG TGATCTGTGG TATTAAAGCA CCCATGCCTT TGTTTTGCAG ACACTAGCAG
  GGCTGAACCA TGTGGCAGAT AATAAGGGAA ATTGTCATCA AAGGACTTAA AGCACAGTAG
  AATAAATGGT AAGTGGTAGA GAGAATATTT TTACAGTCTT CTGCCTCACC AATGCATAGG
  AATGTACATT TAAAAGGTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135545530	ENSMUSSNP4627841	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47374858					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101129022 () rs orientation: forward

Symbol	Name	Function Class
Gm65590	predicted gene, 65590	within coordinates
Rr581978	regulatory region 581978	1608 bp distal