rs47374971 SNP Detail

Summary

• ID
  rs47374971
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170785942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TATAATTCTT TATATTCTGG AGGCTGGGAC CAGAATCTGG
  TAAAGGCTTT CTTGCCCTGT CATTTCATGG GTTAAGAAGG GGGAAATGGA GCAGGAAGGA
  K
  AAACAGAGCC AAAAGATAGC AAACTCGCCC TTTTAGAAGG AAGCCACTCC CACAAAACTA
  GCTCTCTGCT GTGGGCTAGT CACCTCCCAT CAGACCCCAC C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146148867	ENSMUSSNP6152832	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47374971					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170785942 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	244 bp downstream
Gm70986	predicted gene, 70986	57 bp upstream
Rr20517	regulatory region 20517	459 bp proximal
Rr20518	regulatory region 20518	1059 bp proximal
Rr20519	regulatory region 20519	1458 bp proximal
Tssr284	transcription start site region 284	1521 bp downstream
Tssr14949	transcription start site region 14949	522 bp downstream
Tssr14950	transcription start site region 14950	1366 bp downstream
Tssr14951	transcription start site region 14951	1444 bp downstream
Tssr14952	transcription start site region 14952	1701 bp downstream
Tssr14953	transcription start site region 14953	1716 bp downstream