rs47375578 SNP Detail

Summary

• ID
  rs47375578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10957159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCCTTG TGCTTCTCAG
  AGGAGATGTG GTCTTGCCAT TGCTTCTCAC TGTTACAGTT CTTCCCACAC ATCCAGCAGT
  GGAAGTCCAC CTAAGAGTGC AGGGAGATGT GCTGCCTGAG AGCCTGGACC TCTCACTGCT
  GCCTGAGATT AGTCCAGGCT TCACTCTGGG GAAGCCAGGC AAGGGACATA TAATCCAAAA
  Y
  CAGACATAGT ATCAGTACAG GACCAACTAC AGTATGGGGA CAGAAGCCAA AGCACAAGAA
  GCTAAGTAGT GCTCATCCAG AGAAGCTGCT GTACAAACTA GGTCATTTGA AAGGCAGTTA
  AGTATTCTGG GCAGAATTAA CACCCTGAGG AAAAGCAGGA GCAGCACAAG GTCAGAGCAG
  GCCAGCTCTA GAATAACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	DBA/2J	PWD/PhJ
ss52594006	NES15689341	PERLEGEN	MM_PANEL2	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	DBA/2J	PWD/PhJ
rs47375578					SNP	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52594006	NES15689341	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10957159 () rs orientation: forward

Symbol	Name	Function Class
D16Mit164	DNA segment, Chr 16, Massachusetts Institute of Technology 164	397 bp proximal
Gm61125	predicted gene, 61125	within coordinates
Zc3h7a	zinc finger CCCH type containing 7 A	within coordinates